miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86109298|gb|BB920507.1|BB920507 CCATAAACGGCTTTAGTCTTTCTTCTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCATCT
CTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCC
TTTCATCACTCCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGG
AGAAGGCCGACTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAAGCT
GCAACACCATCATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAAGAA
AGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCATGCT
CAGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAACTTG
GTTCCACCATATGACCAGG




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  313 bits (802), Expect = 5e-85
 Identities = 163/194 (84%), Positives = 171/194 (88%), Gaps = 2/194 (1%)
 Frame = +3

Query: 3   INGFSLSSLSHAKTSIKKTTLRPF--ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITPI 176
           INGFSLSSLS AKTS K+TTLRPF  ASLN        TFPSLIQDKPVFASSSP ITP+
Sbjct: 6   INGFSLSSLSPAKTSTKRTTLRPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPV 65

Query: 177 LREEMGKGYEEAIQELEKLLREKADLKATAAEKVEQITAQLGSVTAQAATPSSSDGIPTS 356
           LREEMGKGY+EAI+EL+KLLREK +LKATAAEKVEQITAQLG       T SSSDGIP S
Sbjct: 66  LREEMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLG-------TTSSSDGIPKS 118

Query: 357 EASERIKTGFIHFKKEKYDKNPALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAF 536
           EASERIKTGF+HFKKEKYDKNPALYGELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEAF
Sbjct: 119 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 178

Query: 537 VVRNVANLVPPYDQ 578
           VVRNVANLVPPYDQ
Sbjct: 179 VVRNVANLVPPYDQ 192